| Inbound Relationships | Type | Active | Source | Characteristic | Refinability | Group | 
| Congenital malformation of clitoris | Is a | False | Congenital malformation of genital organs | Inferred relationship | Existential restriction modifier |  | 
| Congenital fistulae between uterus and digestive and urinary tracts | Is a | False | Congenital malformation of genital organs | Inferred relationship | Existential restriction modifier |  | 
| Atresia of lower vagina | Is a | False | Congenital malformation of genital organs | Inferred relationship | Existential restriction modifier |  | 
| Congenital penile adhesion | Is a | False | Congenital malformation of genital organs | Inferred relationship | Existential restriction modifier |  | 
| Congenital absence of labium minor | Is a | False | Congenital malformation of genital organs | Inferred relationship | Existential restriction modifier |  | 
| Congenital absence of labium major | Is a | False | Congenital malformation of genital organs | Inferred relationship | Existential restriction modifier |  | 
| Streak gonad | Is a | False | Congenital malformation of genital organs | Inferred relationship | Existential restriction modifier |  | 
| Gonadal dysgenesis | Is a | True | Congenital malformation of genital organs | Inferred relationship | Existential restriction modifier |  | 
| Congenital anomaly of female genital system | Is a | True | Congenital malformation of genital organs | Inferred relationship | Existential restriction modifier |  | 
| Congenital anomaly of male genital system | Is a | True | Congenital malformation of genital organs | Inferred relationship | Existential restriction modifier |  | 
| Hydrometrocolpos, postaxial polydactyly, and congenital heart malformation | Is a | True | Congenital malformation of genital organs | Inferred relationship | Existential restriction modifier |  | 
| Duplication of external genitalia | Is a | True | Congenital malformation of genital organs | Inferred relationship | Existential restriction modifier |  | 
| Short stature with craniofacial anomalies and genital hypoplasia syndrome | Is a | True | Congenital malformation of genital organs | Inferred relationship | Existential restriction modifier |  | 
| Intellectual disability and short stature with hand contracture and genital anomaly syndrome | Is a | True | Congenital malformation of genital organs | Inferred relationship | Existential restriction modifier |  | 
| Craniofacial digital and genital anomalies syndrome | Is a | True | Congenital malformation of genital organs | Inferred relationship | Existential restriction modifier |  | 
| X-linked lissencephaly with agenesis of corpus callosum and genital anomaly syndrome | Is a | True | Congenital malformation of genital organs | Inferred relationship | Existential restriction modifier |  | 
| Deafness, genital anomaly, metacarpal and metatarsal synostosis syndrome | Is a | True | Congenital malformation of genital organs | Inferred relationship | Existential restriction modifier |  | 
| Embryonic cyst of male genital structure | Is a | True | Congenital malformation of genital organs | Inferred relationship | Existential restriction modifier |  | 
| Meacham syndrome | Is a | True | Congenital malformation of genital organs | Inferred relationship | Existential restriction modifier |  | 
| 46,XY ovotesticular disorder of sex development | Is a | False | Congenital malformation of genital organs | Inferred relationship | Existential restriction modifier |  | 
| Pseudohermaphroditism | Is a | True | Congenital malformation of genital organs | Inferred relationship | Existential restriction modifier |  | 
| 46,XY disorder of sex development, adrenal insufficiency due to cytochrome P450 family 11 subfamily A member 1 deficiency | Is a | False | Congenital malformation of genital organs | Inferred relationship | Existential restriction modifier |  | 
| False hermaphrodite | Is a | True | Congenital malformation of genital organs | Inferred relationship | Existential restriction modifier |  | 
| 46,XY disorder of sex development | Is a | True | Congenital malformation of genital organs | Inferred relationship | Existential restriction modifier |  | 
| 46,XX disorder of sex development | Is a | True | Congenital malformation of genital organs | Inferred relationship | Existential restriction modifier |  | 
| Congenital labioscrotal agenesis, cerebellar malformation, corneal dystrophy, facial dysmorphism syndrome | Is a | True | Congenital malformation of genital organs | Inferred relationship | Existential restriction modifier |  | 
| Congenital anomaly of broad ligament | Is a | True | Congenital malformation of genital organs | Inferred relationship | Existential restriction modifier |  | 
| [X]Other congenital malformations of vas deferens, epididymis, seminal vesicles and prostate | Is a | False | Congenital malformation of genital organs | Inferred relationship | Existential restriction modifier |  | 
| [X]Congenital malformations of genital organs | Is a | False | Congenital malformation of genital organs | Inferred relationship | Existential restriction modifier |  | 
| [X]Other specified congenital malformations of female genitalia | Is a | False | Congenital malformation of genital organs | Inferred relationship | Existential restriction modifier |  | 
| [X]Other congenital malformations of testis and scrotum | Is a | False | Congenital malformation of genital organs | Inferred relationship | Existential restriction modifier |  | 
| [X]Other specified congenital malformations of male genital organs | Is a | False | Congenital malformation of genital organs | Inferred relationship | Existential restriction modifier |  | 
| Other specified genital organ anomaly | Is a | False | Congenital malformation of genital organs | Inferred relationship | Existential restriction modifier |  | 
| Other cervical, vaginal and external female genital anomaly | Is a | False | Congenital malformation of genital organs | Inferred relationship | Existential restriction modifier |  | 
| Other congenital anomaly of testis or scrotum | Is a | False | Congenital malformation of genital organs | Inferred relationship | Existential restriction modifier |  | 
| Other congenital anomaly of vas deferens or prostate | Is a | False | Congenital malformation of genital organs | Inferred relationship | Existential restriction modifier |  | 
| Genital organ anomaly NOS | Is a | False | Congenital malformation of genital organs | Inferred relationship | Existential restriction modifier |  |